Welcome to the forums. Please post in English or French.

You are not logged in.

#1 2011-10-05 12:50:37

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

[SOLVED] Fedora 15 : scotch compiling error

Using fedora 15 and
gcc-4.6.1-9.fc15.i686

Compiling aster 11.0.10
on 32 bit system

But error during scotch compiling. It fails.

Here follows the relevant (as per my knowledge) part from setup.log

# Environment settings :


--------------------------------------------------------------------------------
Checking for dependencies and required variables for 'scotch'...       [  OK  ]

--------------------------------------------------------------------------------
Installation of   : scotch 5.1.11_esmumps
  Static mapping, graph partitioning, and sparse matrix block ordering package.
Archive filename  : scotch-5.1.11_esmumps
Destination       : /home/digvijay/aster/11.0.10/public/scotch_5.1.11_esmumps
Working directory : /tmp/install_scotch.19194
--------------------------------------------------------------------------------

Filling cache...                                                       [  OK  ]
Checking permissions...                                                [  OK  ]

>>> Extraction <<<

entering directory '/tmp/install_scotch.19194'
Extracting scotch-5.1.11_esmumps-1.tar.gz...                           [  OK  ]
 --- 695 files extracted
leaving directory '/tmp/install_scotch.19194'

>>> Modifying pre-configured files <<<

entering directory '/tmp/install_scotch.19194/scotch_5.1.11_esmumps'
modifying src/Makefile.inc                                             [  OK  ]
leaving directory '/tmp/install_scotch.19194/scotch_5.1.11_esmumps'

>>> Building the product <<<

entering directory '/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src'
Command line : make
compiling scotch...                                                    
Command output :
mkdir ../bin
mkdir ../include
mkdir ../lib
(cd libscotch ;      make VERSION=5 RELEASE=1 PATCHLEVEL=10 scotch && make install)
make[1]: Entering directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/libscotch'
rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output dummysizes
make CC="/usr/bin/gcc" CCD="/usr/bin/gcc"	\
				scotch.h				\
				scotchf.h				\
				libscotch.a				\
				libscotcherr.a			\
				libscotcherrexit.a
make[2]: Entering directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/libscotch'
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict -DSCOTCH_VERSION=5 -DSCOTCH_RELEASE=1 -DSCOTCH_PATCHLEVEL=10 dummysizes.c -o dummysizes -lz -lm -lrt
./dummysizes library.h scotch.h
./dummysizes libraryf.h scotchf.h
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch.c -o arch.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_build.c -o arch_build.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_cmplt.c -o arch_cmplt.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_cmpltw.c -o arch_cmpltw.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_deco.c -o arch_deco.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_hcub.c -o arch_hcub.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_mesh.c -o arch_mesh.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_tleaf.c -o arch_tleaf.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_torus.c -o arch_torus.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_vcmplt.c -o arch_vcmplt.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c arch_vhcub.c -o arch_vhcub.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph.c -o bgraph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_bd.c -o bgraph_bipart_bd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_df.c -o bgraph_bipart_df.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_ex.c -o bgraph_bipart_ex.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_fm.c -o bgraph_bipart_fm.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_gg.c -o bgraph_bipart_gg.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_gp.c -o bgraph_bipart_gp.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_ml.c -o bgraph_bipart_ml.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_st.c -o bgraph_bipart_st.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_bipart_zr.c -o bgraph_bipart_zr.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_check.c -o bgraph_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c bgraph_store.c -o bgraph_store.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common.c -DSCOTCH_COMMON_RENAME -o common.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_file.c -DSCOTCH_COMMON_RENAME -o common_file.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_file_compress.c -DSCOTCH_COMMON_RENAME -o common_file_compress.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_file_uncompress.c -DSCOTCH_COMMON_RENAME -o common_file_uncompress.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_integer.c -DSCOTCH_COMMON_RENAME -o common_integer.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_memory.c -DSCOTCH_COMMON_RENAME -o common_memory.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_string.c -DSCOTCH_COMMON_RENAME -o common_string.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c common_stub.c -DSCOTCH_COMMON_RENAME -o common_stub.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c gain.c -o gain.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c geom.c -o geom.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph.c -o graph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_base.c -o graph_base.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_check.c -o graph_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_coarsen.c -o graph_coarsen.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_induce.c -o graph_induce.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_io.c -o graph_io.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_io_chac.c -o graph_io_chac.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_io_habo.c -o graph_io_habo.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_io_mmkt.c -o graph_io_mmkt.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_io_scot.c -o graph_io_scot.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c graph_list.c -o graph_list.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hall_order_hd.c -o hall_order_hd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hall_order_hf.c -o hall_order_hf.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hall_order_hx.c -o hall_order_hx.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph.c -o hgraph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_check.c -o hgraph_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_induce.c -o hgraph_induce.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_bl.c -o hgraph_order_bl.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_cp.c -o hgraph_order_cp.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_gp.c -o hgraph_order_gp.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_hd.c -o hgraph_order_hd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_hf.c -o hgraph_order_hf.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_hx.c -o hgraph_order_hx.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_nd.c -o hgraph_order_nd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_si.c -o hgraph_order_si.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hgraph_order_st.c -o hgraph_order_st.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh.c -o hmesh.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_check.c -o hmesh_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_hgraph.c -o hmesh_hgraph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_induce.c -o hmesh_induce.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_mesh.c -o hmesh_mesh.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_bl.c -o hmesh_order_bl.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_cp.c -o hmesh_order_cp.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_gr.c -o hmesh_order_gr.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_gp.c -o hmesh_order_gp.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_hd.c -o hmesh_order_hd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_hf.c -o hmesh_order_hf.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_hx.c -o hmesh_order_hx.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_nd.c -o hmesh_order_nd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_si.c -o hmesh_order_si.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c hmesh_order_st.c -o hmesh_order_st.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph.c -o kgraph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph_check.c -o kgraph_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph_map_ml.c -o kgraph_map_ml.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph_map_rb.c -o kgraph_map_rb.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph_map_rb_map.c -o kgraph_map_rb_map.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph_map_rb_part.c -o kgraph_map_rb_part.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c kgraph_map_st.c -o kgraph_map_st.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_arch.c -o library_arch.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_arch_f.c -o library_arch_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_arch_build.c -o library_arch_build.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_arch_build_f.c -o library_arch_build_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_geom.c -o library_geom.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_geom_f.c -o library_geom_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph.c -o library_graph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_f.c -o library_graph_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_base.c -o library_graph_base.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_base_f.c -o library_graph_base_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_check.c -o library_graph_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_check_f.c -o library_graph_check_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_chac.c -o library_graph_io_chac.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_chac_f.c -o library_graph_io_chac_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_habo.c -o library_graph_io_habo.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_habo_f.c -o library_graph_io_habo_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_mmkt.c -o library_graph_io_mmkt.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_mmkt_f.c -o library_graph_io_mmkt_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_scot.c -o library_graph_io_scot.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_io_scot_f.c -o library_graph_io_scot_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_map.c -o library_graph_map.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_map_f.c -o library_graph_map_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_map_view.c -o library_graph_map_view.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_map_view_f.c -o library_graph_map_view_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_order.c -o library_graph_order.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_graph_order_f.c -o library_graph_order_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mapping.c -o library_mapping.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh.c -o library_mesh.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_f.c -o library_mesh_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_graph.c -o library_mesh_graph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_graph_f.c -o library_mesh_graph_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_io_habo.c -o library_mesh_io_habo.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_io_habo_f.c -o library_mesh_io_habo_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_io_scot.c -o library_mesh_io_scot.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_io_scot_f.c -o library_mesh_io_scot_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_order.c -o library_mesh_order.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_mesh_order_f.c -o library_mesh_order_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_order.c -o library_order.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_parser.c -o library_parser.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_parser_f.c -o library_parser_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_random.c -o library_random.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_random_f.c -o library_random_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_strat.c -o library_strat.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_version.c -o library_version.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_version_f.c -o library_version_f.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mapping.c -o mapping.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mapping_io.c -o mapping_io.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh.c -o mesh.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_check.c -o mesh_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_coarsen.c -o mesh_coarsen.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_graph.c -o mesh_graph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_induce_sepa.c -o mesh_induce_sepa.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_io.c -o mesh_io.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_io_habo.c -o mesh_io_habo.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c mesh_io_scot.c -o mesh_io_scot.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c order.c -o order.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c order_check.c -o order_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c order_io.c -o order_io.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c parser.c -o parser.o
(/usr/bin/bison -y -pscotchyy -b y -d -v parser_yy.y &&		\
				 mv y.tab.c parser_yy.c &&		\
				 mv y.tab.h parser_ly.h) ||		\
				cp last_resort/parser_ly.h last_resort/parser_yy.c .
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c parser_yy.c -o parser_yy.o
(/usr/bin/flex -Pscotchyy -olex.yy.c parser_ll.l &&			\
				 mv lex.yy.c parser_ll.c) ||		\
				cp last_resort/parser_ll.c . 
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c parser_ll.c -o parser_ll.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph.c -o vgraph.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_check.c -o vgraph_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_bd.c -o vgraph_separate_bd.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_es.c -o vgraph_separate_es.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_fm.c -o vgraph_separate_fm.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_gg.c -o vgraph_separate_gg.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_gp.c -o vgraph_separate_gp.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_ml.c -o vgraph_separate_ml.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_st.c -o vgraph_separate_st.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_th.c -o vgraph_separate_th.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_vw.c -o vgraph_separate_vw.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_separate_zr.c -o vgraph_separate_zr.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vgraph_store.c -o vgraph_store.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh.c -o vmesh.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_check.c -o vmesh_check.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_separate_fm.c -o vmesh_separate_fm.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_separate_gg.c -o vmesh_separate_gg.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_separate_gr.c -o vmesh_separate_gr.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_separate_ml.c -o vmesh_separate_ml.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_separate_zr.c -o vmesh_separate_zr.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_separate_st.c -o vmesh_separate_st.o
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c vmesh_store.c -o vmesh_store.o
ar -ruv libscotch.a arch.o arch_build.o arch_cmplt.o arch_cmpltw.o arch_deco.o arch_hcub.o arch_mesh.o arch_tleaf.o arch_torus.o arch_vcmplt.o arch_vhcub.o bgraph.o bgraph_bipart_bd.o bgraph_bipart_df.o bgraph_bipart_ex.o bgraph_bipart_fm.o bgraph_bipart_gg.o bgraph_bipart_gp.o bgraph_bipart_ml.o bgraph_bipart_st.o bgraph_bipart_zr.o bgraph_check.o bgraph_store.o common.o common_file.o common_file_compress.o common_file_uncompress.o common_integer.o common_memory.o common_string.o common_stub.o gain.o geom.o graph.o graph_base.o graph_check.o graph_coarsen.o graph_induce.o graph_io.o graph_io_chac.o graph_io_habo.o graph_io_mmkt.o graph_io_scot.o graph_list.o hall_order_hd.o hall_order_hf.o hall_order_hx.o hgraph.o hgraph_check.o hgraph_induce.o hgraph_order_bl.o hgraph_order_cp.o hgraph_order_gp.o hgraph_order_hd.o hgraph_order_hf.o hgraph_order_hx.o hgraph_order_nd.o hgraph_order_si.o hgraph_order_st.o hmesh.o hmesh_check.o hmesh_hgraph.o hmesh_induce.o hmesh_mesh.o hmesh_order_bl.o hmesh_order_cp.o hmesh_order_gr.o hmesh_order_gp.o hmesh_order_hd.o hmesh_order_hf.o hmesh_order_hx.o hmesh_order_nd.o hmesh_order_si.o hmesh_order_st.o kgraph.o kgraph_check.o kgraph_map_ml.o kgraph_map_rb.o kgraph_map_rb_map.o kgraph_map_rb_part.o kgraph_map_st.o library_arch.o library_arch_f.o library_arch_build.o library_arch_build_f.o library_geom.o library_geom_f.o library_graph.o library_graph_f.o library_graph_base.o library_graph_base_f.o library_graph_check.o library_graph_check_f.o library_graph_io_chac.o library_graph_io_chac_f.o library_graph_io_habo.o library_graph_io_habo_f.o library_graph_io_mmkt.o library_graph_io_mmkt_f.o library_graph_io_scot.o library_graph_io_scot_f.o library_graph_map.o library_graph_map_f.o library_graph_map_view.o library_graph_map_view_f.o library_graph_order.o library_graph_order_f.o library_mapping.o library_mesh.o library_mesh_f.o library_mesh_graph.o library_mesh_graph_f.o library_mesh_io_habo.o library_mesh_io_habo_f.o library_mesh_io_scot.o library_mesh_io_scot_f.o library_mesh_order.o library_mesh_order_f.o library_order.o library_parser.o library_parser_f.o library_random.o library_random_f.o library_strat.o library_version.o library_version_f.o mapping.o mapping_io.o mesh.o mesh_check.o mesh_coarsen.o mesh_graph.o mesh_induce_sepa.o mesh_io.o mesh_io_habo.o mesh_io_scot.o order.o order_check.o order_io.o parser.o parser_ll.o parser_yy.o vgraph.o vgraph_check.o vgraph_separate_bd.o vgraph_separate_es.o vgraph_separate_fm.o vgraph_separate_gg.o vgraph_separate_gp.o vgraph_separate_ml.o vgraph_separate_st.o vgraph_separate_th.o vgraph_separate_vw.o vgraph_separate_zr.o vgraph_store.o vmesh.o vmesh_check.o vmesh_separate_fm.o vmesh_separate_gg.o vmesh_separate_gr.o vmesh_separate_ml.o vmesh_separate_zr.o vmesh_separate_st.o vmesh_store.o
ar: creating libscotch.a
a - arch.o
a - arch_build.o
a - arch_cmplt.o
a - arch_cmpltw.o
a - arch_deco.o
a - arch_hcub.o
a - arch_mesh.o
a - arch_tleaf.o
a - arch_torus.o
a - arch_vcmplt.o
a - arch_vhcub.o
a - bgraph.o
a - bgraph_bipart_bd.o
a - bgraph_bipart_df.o
a - bgraph_bipart_ex.o
a - bgraph_bipart_fm.o
a - bgraph_bipart_gg.o
a - bgraph_bipart_gp.o
a - bgraph_bipart_ml.o
a - bgraph_bipart_st.o
a - bgraph_bipart_zr.o
a - bgraph_check.o
a - bgraph_store.o
a - common.o
a - common_file.o
a - common_file_compress.o
a - common_file_uncompress.o
a - common_integer.o
a - common_memory.o
a - common_string.o
a - common_stub.o
a - gain.o
a - geom.o
a - graph.o
a - graph_base.o
a - graph_check.o
a - graph_coarsen.o
a - graph_induce.o
a - graph_io.o
a - graph_io_chac.o
a - graph_io_habo.o
a - graph_io_mmkt.o
a - graph_io_scot.o
a - graph_list.o
a - hall_order_hd.o
a - hall_order_hf.o
a - hall_order_hx.o
a - hgraph.o
a - hgraph_check.o
a - hgraph_induce.o
a - hgraph_order_bl.o
a - hgraph_order_cp.o
a - hgraph_order_gp.o
a - hgraph_order_hd.o
a - hgraph_order_hf.o
a - hgraph_order_hx.o
a - hgraph_order_nd.o
a - hgraph_order_si.o
a - hgraph_order_st.o
a - hmesh.o
a - hmesh_check.o
a - hmesh_hgraph.o
a - hmesh_induce.o
a - hmesh_mesh.o
a - hmesh_order_bl.o
a - hmesh_order_cp.o
a - hmesh_order_gr.o
a - hmesh_order_gp.o
a - hmesh_order_hd.o
a - hmesh_order_hf.o
a - hmesh_order_hx.o
a - hmesh_order_nd.o
a - hmesh_order_si.o
a - hmesh_order_st.o
a - kgraph.o
a - kgraph_check.o
a - kgraph_map_ml.o
a - kgraph_map_rb.o
a - kgraph_map_rb_map.o
a - kgraph_map_rb_part.o
a - kgraph_map_st.o
a - library_arch.o
a - library_arch_f.o
a - library_arch_build.o
a - library_arch_build_f.o
a - library_geom.o
a - library_geom_f.o
a - library_graph.o
a - library_graph_f.o
a - library_graph_base.o
a - library_graph_base_f.o
a - library_graph_check.o
a - library_graph_check_f.o
a - library_graph_io_chac.o
a - library_graph_io_chac_f.o
a - library_graph_io_habo.o
a - library_graph_io_habo_f.o
a - library_graph_io_mmkt.o
a - library_graph_io_mmkt_f.o
a - library_graph_io_scot.o
a - library_graph_io_scot_f.o
a - library_graph_map.o
a - library_graph_map_f.o
a - library_graph_map_view.o
a - library_graph_map_view_f.o
a - library_graph_order.o
a - library_graph_order_f.o
a - library_mapping.o
a - library_mesh.o
a - library_mesh_f.o
a - library_mesh_graph.o
a - library_mesh_graph_f.o
a - library_mesh_io_habo.o
a - library_mesh_io_habo_f.o
a - library_mesh_io_scot.o
a - library_mesh_io_scot_f.o
a - library_mesh_order.o
a - library_mesh_order_f.o
a - library_order.o
a - library_parser.o
a - library_parser_f.o
a - library_random.o
a - library_random_f.o
a - library_strat.o
a - library_version.o
a - library_version_f.o
a - mapping.o
a - mapping_io.o
a - mesh.o
a - mesh_check.o
a - mesh_coarsen.o
a - mesh_graph.o
a - mesh_induce_sepa.o
a - mesh_io.o
a - mesh_io_habo.o
a - mesh_io_scot.o
a - order.o
a - order_check.o
a - order_io.o
a - parser.o
a - parser_ll.o
a - parser_yy.o
a - vgraph.o
a - vgraph_check.o
a - vgraph_separate_bd.o
a - vgraph_separate_es.o
a - vgraph_separate_fm.o
a - vgraph_separate_gg.o
a - vgraph_separate_gp.o
a - vgraph_separate_ml.o
a - vgraph_separate_st.o
a - vgraph_separate_th.o
a - vgraph_separate_vw.o
a - vgraph_separate_zr.o
a - vgraph_store.o
a - vmesh.o
a - vmesh_check.o
a - vmesh_separate_fm.o
a - vmesh_separate_gg.o
a - vmesh_separate_gr.o
a - vmesh_separate_ml.o
a - vmesh_separate_zr.o
a - vmesh_separate_st.o
a - vmesh_store.o
/usr/bin/ranlib libscotch.a
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_error.c -o library_error.o
ar -ruv libscotcherr.a library_error.o
ar: creating libscotcherr.a
a - library_error.o
/usr/bin/ranlib libscotcherr.a
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict  -c library_error_exit.c -o library_error_exit.o
ar -ruv libscotcherrexit.a library_error_exit.o
ar: creating libscotcherrexit.a
a - library_error_exit.o
/usr/bin/ranlib libscotcherrexit.a
make[2]: Leaving directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/libscotch'
make[1]: Leaving directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/libscotch'
make[1]: Entering directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/libscotch'
cp scotch.h scotchf.h ../../include
cp libscotch.a libscotcherr*.a ../../lib
make[1]: Leaving directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/libscotch'
(cd scotch ;         make VERSION=5 RELEASE=1 PATCHLEVEL=10 scotch && make install)
make[1]: Entering directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/scotch'
rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst
make CC="/usr/bin/gcc" SCOTCHLIB=scotch	\
				acpl				\
				amk_ccc				\
				amk_fft2				\
				amk_grf				\
				amk_hy				\
				amk_m2				\
				amk_p2				\
				atst				\
				gbase				\
				gcv				\
				gmap				\
				gmk_hy				\
				gmk_m2				\
				gmk_m3				\
				gmk_msh				\
				gmk_ub2				\
				gmtst				\
				gord				\
				gotst				\
				gout				\
				gpart				\
				gscat				\
				gtst				\
				mcv				\
				mmk_m2				\
				mmk_m3				\
				mord				\
				mtst
make[2]: Entering directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/scotch'
/usr/bin/gcc -fno-stack-protector -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_PTHREAD -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -DSCOTCH_RENAME_PARSER -DSCOTCH_PTHREAD -Drestrict=__restrict -I../../include -I../libscotch acpl.c -o acpl -L../../lib -lscotch -lscotcherrexit -lz -lm -lrt
/usr/bin/ld: ../../lib/libscotch.a(common_file_compress.o): undefined reference to symbol 'pthread_create@@GLIBC_2.1'
/usr/bin/ld: note: 'pthread_create@@GLIBC_2.1' is defined in DSO /lib/libpthread.so.0 so try adding it to the linker command line
/lib/libpthread.so.0: could not read symbols: Invalid operation
collect2: ld returned 1 exit status
make[2]: *** [acpl] Error 1
make[2]: Leaving directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/scotch'
make[1]: *** [scotch] Error 2
make[1]: Leaving directory `/tmp/install_scotch.19194/scotch_5.1.11_esmumps/src/scotch'
make: *** [scotch] Error 2

compiling scotch...                                                    [FAILED]
Exit code : 2

Kindly help me compiling aster.

Last edited by dbpatankar (2011-10-09 18:53:20)

Offline

#2 2011-10-05 13:49:23

mathieu.courtois
Administrator
From: France
Registered: 2007-11-21
Posts: 1,163

Re: [SOLVED] Fedora 15 : scotch compiling error

Hello,

Try to compile scotch separately (extract its source files from the SRC directory). It seems there is a mistake with the pthread library...?

MC


Code_Aster release : last unstable on Ubuntu 16.04 64 bits - GNU Compilers

Please do not forget to tag your first post as *SOLVED* when it is!

Offline

#3 2011-10-07 15:00:37

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

Re: [SOLVED] Fedora 15 : scotch compiling error

courtois wrote:

Hello,

Try to compile scotch separately (extract its source files from the SRC directory). It seems there is a mistake with the pthread library...?

MC

I tried following and got stuck in other problem :

I installed scotch from fedora 15 repo. And made necessary changes in setup.cfg
Then tried to install aster-full with setup.py

But now mumps is unable to compile.

Here follows the relavent part :

# Environment settings :


--------------------------------------------------------------------------------
Checking for dependencies and required variables for 'mumps'...        [  OK  ]

--------------------------------------------------------------------------------
Installation of   : mumps 4.9.2
  MUMPS: a MUltifrontal Massively Parallel sparse direct Solver.
Archive filename  : mumps-4.9.2
Destination       : /home/digvijay/aster/11.0.10/public/mumps-4.9.2
Working directory : /tmp/install_mumps.12534
--------------------------------------------------------------------------------

Filling cache...                                                       [  OK  ]
Checking permissions...                                                [  OK  ]

>>> Extraction <<<

entering directory '/tmp/install_mumps.12534'
Extracting mumps-4.9.2-2.tar.gz...                                     [  OK  ]
 --- 212 files extracted
leaving directory '/tmp/install_mumps.12534'

>>> Modifying pre-configured files <<<

entering directory '/tmp/install_mumps.12534/mumps-4.9.2'
modifying Makefile.inc                                                 [  OK  ]
leaving directory '/tmp/install_mumps.12534/mumps-4.9.2'

>>> Building the product <<<

entering directory '/tmp/install_mumps.12534/mumps-4.9.2'
Command line : make all
compiling mumps...                                                     
Command output :
make ARITH=s mumps_lib
make[1]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2'
(cd libseq; make)
make[2]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2/libseq'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -c mpi.f
mpi.f:574.30:

        CALL MUMPS_COPY_REAL( SENDBUF, RECVBUF, COUNT )
                              1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to REAL(4)
mpi.f:577.42:

        CALL MUMPS_COPY_DOUBLE_PRECISION( SENDBUF, RECVBUF, COUNT )
                                          1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to REAL(8)
mpi.f:579.33:

        CALL MUMPS_COPY_COMPLEX( SENDBUF, RECVBUF, COUNT )
                                 1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to COMPLEX(4)
mpi.f:581.40:

        CALL MUMPS_COPY_DOUBLE_COMPLEX( SENDBUF, RECVBUF, COUNT )
                                        1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to COMPLEX(8)
mpi.f:583.43:

        CALL MUMPS_COPY_2DOUBLE_PRECISION( SENDBUF, RECVBUF, COUNT )
                                           1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to REAL(8)
/usr/bin/gcc -O -fno-stack-protector -DAdd_ -I. -c mpic.c
/usr/bin/gcc -O -fno-stack-protector -DAdd_ -I. -c elapse.c
ar vr libmpiseq.a mpi.o mpic.o elapse.o
ar: creating libmpiseq.a
a - mpi.o
a - mpic.o
a - elapse.o
echo libmpiseq.a
libmpiseq.a
make[2]: Leaving directory `/tmp/install_mumps.12534/mumps-4.9.2/libseq'
if [ "./PORD/lib/" != "" ] ; then \
  cd ./PORD/lib/; \
  make CC="/usr/bin/gcc" CFLAGS="-O -fno-stack-protector" AR="ar vr" ARFUNCT= RANLIB="echo"; \
fi;
make[2]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2/PORD/lib'
/usr/bin/gcc -I../include -O -fno-stack-protector  -c graph.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c gbipart.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c gbisect.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c ddcreate.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c ddbisect.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c nestdiss.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c multisector.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c gelim.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c bucket.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c tree.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c symbfac.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c interface.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c sort.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c minpriority.c
ar vr  libpord.a graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o multisector.o gelim.o bucket.o tree.o symbfac.o interface.o sort.o minpriority.o 
ar: creating libpord.a
a - graph.o
a - gbipart.o
a - gbisect.o
a - ddcreate.o
a - ddbisect.o
a - nestdiss.o
a - multisector.o
a - gelim.o
a - bucket.o
a - tree.o
a - symbfac.o
a - interface.o
a - sort.o
a - minpriority.o
echo libpord.a
libpord.a
make[2]: Leaving directory `/tmp/install_mumps.12534/mumps-4.9.2/PORD/lib'
if [ "./PORD/lib/" != "" ] ; then \
  cp ./PORD/lib//libpord.a lib/libpord.a; \
fi;
(cd src ; make s)
make[2]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2/src'
make ARITH=s mumps_lib
make[3]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2/src'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c mumps_part9.F
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_common.c
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c mumps_ooc_common.F
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_orderings.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_size.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_io.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_io_basic.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_io_thread.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -c mumps_io_err.c
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c mumps_static_mapping.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c tools_common_mod.F
ar vr ../lib/libmumps_common.a mumps_part9.o mumps_common.o mumps_ooc_common.o mumps_orderings.o mumps_size.o mumps_io.o mumps_io_basic.o mumps_io_thread.o mumps_io_err.o mumps_static_mapping.o tools_common_mod.o
ar: creating ../lib/libmumps_common.a
a - mumps_part9.o
a - mumps_common.o
a - mumps_ooc_common.o
a - mumps_orderings.o
a - mumps_size.o
a - mumps_io.o
a - mumps_io_basic.o
a - mumps_io_thread.o
a - mumps_io_err.o
a - mumps_static_mapping.o
a - tools_common_mod.o
echo ../lib/libmumps_common.a
../lib/libmumps_common.a
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_comm_buffer.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_struc_def.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_load.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_ooc_buffer.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_ooc.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part1.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part2.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part3.F
smumps_part3.F:5772.21:

     &               id%ELTVAR( IELTPTR ), id%A_ELT( RELTPTR ),
                     1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'eltvar' at (1)
smumps_part3.F:5790.17:

     &           id%ELTVAR(IELTPTR),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1)
smumps_part3.F:5798.17:

     &           id%ELTVAR(IELTPTR),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1)
smumps_part3.F:5830.17:

     &           id%ELTVAR(IELTPTR),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1)
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part4.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part5.F
smumps_part5.F:425.44:

               CALL SMUMPS_564(id%KEEP(38), id%PROCNODE(1),
                                            1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'procnode' at (1)
smumps_part5.F:434.17:

     &           id%IS1(NE),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ne' at (1)
smumps_part5.F:1216.14:

     &        id%CANDIDATES(1,1), id%I_AM_CAND(1) )
              1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'candidates' at (1)
smumps_part5.F:1569.20:

     &        id%N, id%MAPPING(1),
                    1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'mapping' at (1)
smumps_part5.F:4785.8:

     &  id%DBLARR(1), KEEP(13), id%INTARR(1),
        1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'dblarr' at (1)
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part6.F
smumps_part6.F:3348.14:

     &        root%SCHUR_POINTER(1),
              1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'val_root' at (1)
smumps_part6.F:3364.14:

     &        root%SCHUR_POINTER(1),
              1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'val_root' at (1)
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part7.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/usr/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part8.F
smumps_part8.F:697.36:

            CALL SMUMPS_535( MTYPE, id%ISOL_LOC(1),
                                    1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'isol_loc' at (1)
smumps_part8.F:950.32:

     &           id%MYID_NODES, id%PTLUST_S(1),
                                1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ptrist' at (1)
smumps_part8.F:968.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:977.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1140.36:

        CALL SMUMPS_245(id%root, N, id%S(1), LA_PASSED,
                                    1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'a' at (1)
smumps_part8.F:1234.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1242.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1274.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1640.10:

     &    id%S(1), LA_PASSED, id%IS( 1 ),
          1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'a' at (1)
smumps_part8.F:1674.48:

     &          JDUMMY, id%KEEP(1),id%KEEP8(1), id%PROCNODE_STEPS(1),
                                                1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'procnode_steps' at (1)
smumps_part8.F:1683.16:

     &          id%PTLUST_S(1), id%KEEP(1),id%KEEP8(1),
                1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ptrist' at (1)
/usr/bin/gcc -O -fno-stack-protector -I../libseq -DAdd_ -DMUMPS_ARITH=MUMPS_ARITH_s \
       -I../PORD/include/ -I/usr/include  -Dscotch -Dpord -Dmetis -I../include -c mumps_c.c -o smumps_c.o
ar vr ../lib/libsmumps.a smumps_part1.o smumps_part2.o smumps_part3.o smumps_part4.o smumps_part5.o smumps_part6.o smumps_part7.o smumps_part8.o smumps_comm_buffer.o smumps_load.o smumps_c.o smumps_ooc_buffer.o smumps_ooc.o smumps_struc_def.o
ar: creating ../lib/libsmumps.a
a - smumps_part1.o
a - smumps_part2.o
a - smumps_part3.o
a - smumps_part4.o
a - smumps_part5.o
a - smumps_part6.o
a - smumps_part7.o
a - smumps_part8.o
a - smumps_comm_buffer.o
a - smumps_load.o
a - smumps_c.o
a - smumps_ooc_buffer.o
a - smumps_ooc.o
a - smumps_struc_def.o
echo ../lib/libsmumps.a
../lib/libsmumps.a
make[3]: Leaving directory `/tmp/install_mumps.12534/mumps-4.9.2/src'
make[2]: Leaving directory `/tmp/install_mumps.12534/mumps-4.9.2/src'
make[1]: Leaving directory `/tmp/install_mumps.12534/mumps-4.9.2'
(cd examples ; make s)
make[1]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2/examples'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I. -I../include -c ssimpletest.F
/usr/bin/gfortran -o ssimpletest -O  ssimpletest.o ../lib/libsmumps.a ../lib/libmumps_common.a  -L/home/digvijay/aster/11.0.10/public/metis-4.0.3/lib -lmetis -L../PORD/lib/ -lpord -L/usr/lib -lesmumps -lscotch -lscotcherr -L../libseq -lmpiseq -L/usr/lib -llapack -L/usr/lib -lblas /usr/lib/gcc/i686-redhat-linux/3.4.6/libg2c.a -L/usr/lib/gcc/i686-redhat-linux/4.6.1 -lgfortran -lpthread
/usr/bin/ld: cannot find -lesmumps
collect2: ld returned 1 exit status
make[1]: *** [ssimpletest] Error 1
make[1]: Leaving directory `/tmp/install_mumps.12534/mumps-4.9.2/examples'
make: *** [sexamples] Error 2

compiling mumps...                                                     [FAILED]
Exit code : 2
make ARITH=s mumps_lib
make[1]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2'
(cd libseq; make)
make[2]: Entering directory `/tmp/install_mumps.12534/mumps-4.9.2/libseq'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -c mpi.f
mpi.f:574.30:

I dont know much about compiling and hence do not understand about CFLAGS and related stuff.

However I must mention here that I never had such a problem while installing previous versions. I have compiled old versions atleast 5-6 times on different computers.

Please help me in installing this. I need it badly and that too immediately.

With regards,

Digvijay

Offline

#4 2011-10-07 16:05:10

jeanpierreaubry
Guru
From: nantes (france)
Registered: 2009-03-12
Posts: 3,569

Re: [SOLVED] Fedora 15 : scotch compiling error

hello

as far as i am concerned i solved this scotch problem in version 10.xx
by modifying "set.cfg" file the following way

#-------------------------------------------------------------------------------
# NB : Scotch is installed by default
# Uncomment the following line to not install Scotch libraries
# (under LGPL, available at http://www.labri.fr/perso/pelegrin/scotch/)
_install_scotch  = False

this means not installing scotch at all!
i do not know exactly what is sctoch use and i have lived without it

jean pierre aubry

Last edited by jeanpierreaubry (2011-10-07 16:41:50)

Offline

#5 2011-10-07 16:15:55

Thomas DE SOZA
Guru
From: EDF
Registered: 2007-11-23
Posts: 3,066

Re: [SOLVED] Fedora 15 : scotch compiling error

dbpatankar wrote:
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I. -I../include -c ssimpletest.F
/usr/bin/gfortran -o ssimpletest -O  ssimpletest.o ../lib/libsmumps.a ../lib/libmumps_common.a  -L/home/digvijay/aster/11.0.10/public/metis-4.0.3/lib -lmetis -L../PORD/lib/ -lpord -L/usr/lib -lesmumps -lscotch -lscotcherr -L../libseq -lmpiseq -L/usr/lib -llapack -L/usr/lib -lblas /usr/lib/gcc/i686-redhat-linux/3.4.6/libg2c.a -L/usr/lib/gcc/i686-redhat-linux/4.6.1 -lgfortran -lpthread
/usr/bin/ld: cannot find -lesmumps

Digvijay

This is likely because the library libesmumps provided by SCOTCH for linking with MUMPS is not installed. Look in the packages if there's not a SCOTCH-mumps package or something like that.
Otherwise the only option is to install it manually so that the libesmumps library is built.

If you cannot solve this, you'll have to disable SCOTCH as pointed out above.

TdS

Offline

#6 2011-10-08 11:58:23

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

Re: [SOLVED] Fedora 15 : scotch compiling error

Hi,

Thanks for your support and information.
I managed to install SCOTCH successfully from source.
And then tried to install aster and stll mumps installation is giving some error.

Here follows the code :

# Environment settings :


--------------------------------------------------------------------------------
Checking for dependencies and required variables for 'mumps'...        [  OK  ]

--------------------------------------------------------------------------------
Installation of   : mumps 4.9.2
  MUMPS: a MUltifrontal Massively Parallel sparse direct Solver.
Archive filename  : mumps-4.9.2
Destination       : /home/digvijay/aster/11.0.10/public/mumps-4.9.2
Working directory : /tmp/install_mumps.30324
--------------------------------------------------------------------------------

Filling cache...                                                       [  OK  ]
Checking permissions...                                                [  OK  ]

>>> Extraction <<<

entering directory '/tmp/install_mumps.30324'
Extracting mumps-4.9.2-2.tar.gz...                                     [  OK  ]
 --- 212 files extracted
leaving directory '/tmp/install_mumps.30324'

>>> Modifying pre-configured files <<<

entering directory '/tmp/install_mumps.30324/mumps-4.9.2'
modifying Makefile.inc                                                 [  OK  ]
leaving directory '/tmp/install_mumps.30324/mumps-4.9.2'

>>> Building the product <<<

entering directory '/tmp/install_mumps.30324/mumps-4.9.2'
Command line : make all
compiling mumps...                                                     
Command output :
make ARITH=s mumps_lib
make[1]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2'
(cd libseq; make)
make[2]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2/libseq'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -c mpi.f
mpi.f:574.30:

        CALL MUMPS_COPY_REAL( SENDBUF, RECVBUF, COUNT )
                              1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to REAL(4)
mpi.f:577.42:

        CALL MUMPS_COPY_DOUBLE_PRECISION( SENDBUF, RECVBUF, COUNT )
                                          1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to REAL(8)
mpi.f:579.33:

        CALL MUMPS_COPY_COMPLEX( SENDBUF, RECVBUF, COUNT )
                                 1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to COMPLEX(4)
mpi.f:581.40:

        CALL MUMPS_COPY_DOUBLE_COMPLEX( SENDBUF, RECVBUF, COUNT )
                                        1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to COMPLEX(8)
mpi.f:583.43:

        CALL MUMPS_COPY_2DOUBLE_PRECISION( SENDBUF, RECVBUF, COUNT )
                                           1
Warning: Type mismatch in argument 's' at (1); passed INTEGER(4) to REAL(8)
/usr/bin/gcc -O -fno-stack-protector -DAdd_ -I. -c mpic.c
/usr/bin/gcc -O -fno-stack-protector -DAdd_ -I. -c elapse.c
ar vr libmpiseq.a mpi.o mpic.o elapse.o
ar: creating libmpiseq.a
a - mpi.o
a - mpic.o
a - elapse.o
echo libmpiseq.a
libmpiseq.a
make[2]: Leaving directory `/tmp/install_mumps.30324/mumps-4.9.2/libseq'
if [ "./PORD/lib/" != "" ] ; then \
  cd ./PORD/lib/; \
  make CC="/usr/bin/gcc" CFLAGS="-O -fno-stack-protector" AR="ar vr" ARFUNCT= RANLIB="echo"; \
fi;
make[2]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2/PORD/lib'
/usr/bin/gcc -I../include -O -fno-stack-protector  -c graph.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c gbipart.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c gbisect.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c ddcreate.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c ddbisect.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c nestdiss.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c multisector.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c gelim.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c bucket.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c tree.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c symbfac.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c interface.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c sort.c
/usr/bin/gcc -I../include -O -fno-stack-protector  -c minpriority.c
ar vr  libpord.a graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o multisector.o gelim.o bucket.o tree.o symbfac.o interface.o sort.o minpriority.o 
ar: creating libpord.a
a - graph.o
a - gbipart.o
a - gbisect.o
a - ddcreate.o
a - ddbisect.o
a - nestdiss.o
a - multisector.o
a - gelim.o
a - bucket.o
a - tree.o
a - symbfac.o
a - interface.o
a - sort.o
a - minpriority.o
echo libpord.a
libpord.a
make[2]: Leaving directory `/tmp/install_mumps.30324/mumps-4.9.2/PORD/lib'
if [ "./PORD/lib/" != "" ] ; then \
  cp ./PORD/lib//libpord.a lib/libpord.a; \
fi;
(cd src ; make s)
make[2]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2/src'
make ARITH=s mumps_lib
make[3]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2/src'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c mumps_part9.F
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_common.c
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c mumps_ooc_common.F
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_orderings.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_size.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_io.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_io_basic.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_io_thread.c
/usr/bin/gcc -O -fno-stack-protector -I../libseq -I../include -DAdd_  -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -c mumps_io_err.c
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c mumps_static_mapping.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c tools_common_mod.F
ar vr ../lib/libmumps_common.a mumps_part9.o mumps_common.o mumps_ooc_common.o mumps_orderings.o mumps_size.o mumps_io.o mumps_io_basic.o mumps_io_thread.o mumps_io_err.o mumps_static_mapping.o tools_common_mod.o
ar: creating ../lib/libmumps_common.a
a - mumps_part9.o
a - mumps_common.o
a - mumps_ooc_common.o
a - mumps_orderings.o
a - mumps_size.o
a - mumps_io.o
a - mumps_io_basic.o
a - mumps_io_thread.o
a - mumps_io_err.o
a - mumps_static_mapping.o
a - tools_common_mod.o
echo ../lib/libmumps_common.a
../lib/libmumps_common.a
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_comm_buffer.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_struc_def.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_load.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_ooc_buffer.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_ooc.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part1.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part2.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part3.F
smumps_part3.F:5772.21:

     &               id%ELTVAR( IELTPTR ), id%A_ELT( RELTPTR ),
                     1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'eltvar' at (1)
smumps_part3.F:5790.17:

     &           id%ELTVAR(IELTPTR),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1)
smumps_part3.F:5798.17:

     &           id%ELTVAR(IELTPTR),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1)
smumps_part3.F:5830.17:

     &           id%ELTVAR(IELTPTR),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'elnodes' at (1)
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part4.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part5.F
smumps_part5.F:425.44:

               CALL SMUMPS_564(id%KEEP(38), id%PROCNODE(1),
                                            1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'procnode' at (1)
smumps_part5.F:434.17:

     &           id%IS1(NE),
                 1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ne' at (1)
smumps_part5.F:1216.14:

     &        id%CANDIDATES(1,1), id%I_AM_CAND(1) )
              1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'candidates' at (1)
smumps_part5.F:1569.20:

     &        id%N, id%MAPPING(1),
                    1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'mapping' at (1)
smumps_part5.F:4785.8:

     &  id%DBLARR(1), KEEP(13), id%INTARR(1),
        1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'dblarr' at (1)
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part6.F
smumps_part6.F:3348.14:

     &        root%SCHUR_POINTER(1),
              1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'val_root' at (1)
smumps_part6.F:3364.14:

     &        root%SCHUR_POINTER(1),
              1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'val_root' at (1)
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part7.F
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I. -I../include -c smumps_part8.F
smumps_part8.F:697.36:

            CALL SMUMPS_535( MTYPE, id%ISOL_LOC(1),
                                    1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'isol_loc' at (1)
smumps_part8.F:950.32:

     &           id%MYID_NODES, id%PTLUST_S(1),
                                1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ptrist' at (1)
smumps_part8.F:968.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:977.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1140.36:

        CALL SMUMPS_245(id%root, N, id%S(1), LA_PASSED,
                                    1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'a' at (1)
smumps_part8.F:1234.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1242.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1274.23:

     &          MTYPE, RHS_MUMPS(IBEG), LD_RHS, NBRHS_EFF,
                       1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'rhs' at (1)
smumps_part8.F:1640.10:

     &    id%S(1), LA_PASSED, id%IS( 1 ),
          1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'a' at (1)
smumps_part8.F:1674.48:

     &          JDUMMY, id%KEEP(1),id%KEEP8(1), id%PROCNODE_STEPS(1),
                                                1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'procnode_steps' at (1)
smumps_part8.F:1683.16:

     &          id%PTLUST_S(1), id%KEEP(1),id%KEEP8(1),
                1
Warning: Element of assumed-shaped or pointer array passed to array dummy argument 'ptrist' at (1)
/usr/bin/gcc -O -fno-stack-protector -I../libseq -DAdd_ -DMUMPS_ARITH=MUMPS_ARITH_s \
       -I../PORD/include/ -I/home/digvijay/include  -Dscotch -Dpord -Dmetis -I../include -c mumps_c.c -o smumps_c.o
ar vr ../lib/libsmumps.a smumps_part1.o smumps_part2.o smumps_part3.o smumps_part4.o smumps_part5.o smumps_part6.o smumps_part7.o smumps_part8.o smumps_comm_buffer.o smumps_load.o smumps_c.o smumps_ooc_buffer.o smumps_ooc.o smumps_struc_def.o
ar: creating ../lib/libsmumps.a
a - smumps_part1.o
a - smumps_part2.o
a - smumps_part3.o
a - smumps_part4.o
a - smumps_part5.o
a - smumps_part6.o
a - smumps_part7.o
a - smumps_part8.o
a - smumps_comm_buffer.o
a - smumps_load.o
a - smumps_c.o
a - smumps_ooc_buffer.o
a - smumps_ooc.o
a - smumps_struc_def.o
echo ../lib/libsmumps.a
../lib/libsmumps.a
make[3]: Leaving directory `/tmp/install_mumps.30324/mumps-4.9.2/src'
make[2]: Leaving directory `/tmp/install_mumps.30324/mumps-4.9.2/src'
make[1]: Leaving directory `/tmp/install_mumps.30324/mumps-4.9.2'
(cd examples ; make s)
make[1]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2/examples'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -I../libseq -I. -I../include -c ssimpletest.F
/usr/bin/gfortran -o ssimpletest -O  ssimpletest.o ../lib/libsmumps.a ../lib/libmumps_common.a  -L/home/digvijay/aster/11.0.10/public/metis-4.0.3/lib -lmetis -L../PORD/lib/ -lpord -L/home/digvijay/lib -lesmumps -lscotch -lscotcherr -L../libseq -lmpiseq -L/usr/lib -llapack -L/usr/lib -lblas /usr/lib/gcc/i686-redhat-linux/3.4.6/libg2c.a -L/usr/lib/gcc/i686-redhat-linux/4.6.1 -lgfortran -lpthread
/home/digvijay/lib/libscotch.so: undefined reference to `clock_gettime'
/home/digvijay/lib/libscotch.so: undefined reference to `gzclose'
/home/digvijay/lib/libscotch.so: undefined reference to `gzwrite'
/home/digvijay/lib/libscotch.so: undefined reference to `gzdopen'
/home/digvijay/lib/libscotch.so: undefined reference to `gzsetparams'
/home/digvijay/lib/libscotch.so: undefined reference to `gzread'
collect2: ld returned 1 exit status
make[1]: *** [ssimpletest] Error 1
make[1]: Leaving directory `/tmp/install_mumps.30324/mumps-4.9.2/examples'
make: *** [sexamples] Error 2

compiling mumps...                                                     [FAILED]
Exit code : 2
make ARITH=s mumps_lib
make[1]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2'
(cd libseq; make)
make[2]: Entering directory `/tmp/install_mumps.30324/mumps-4.9.2/libseq'
/usr/bin/gfortran -O -Dintel_ -DALLOW_NON_INIT -O2 -ffixed-line-length-0 -x f77-cpp-input -fPIC -c mpi.f
mpi.f:574.30:

This time one can see that all the required libraries are detected properly.
Still mumps shows compiling failed.

And then it goes beyond this and continue to compile other packages successfully (except aster).
At the end, I see all packages installed successfully except mumps and aster.

However as_run binaries are available in NEW11.0/bin directory.

Can anyone tell me what exactly going on.

And also about the requirement of mumps. Is it necessary to have mumps installed to get aster working?

Offline

#7 2011-10-08 13:33:39

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

Re: [SOLVED] Fedora 15 : scotch compiling error

Update :

Even after uncommenting the line

_install_scotch  = False

mumps shows error while compiling.

And the error suggests that

/usr/bin/ld: cannot find -lesmumps

So now since I am not using scotch library, why is mumps asking me for something which is offered by scotch?

Offline

#8 2011-10-09 10:56:02

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

Re: [SOLVED] Fedora 15 : scotch compiling error

Now since mumps is listed in optional components, I skipped its installation through setup.cfg

But still aster failed to compile :

Here follows the relavant part :

<INFO> Compilation from .../bibfor/elements directory
compiling ...jay/aster/11.0.10/NEW11.0/bibfor/elements/te0215.f         [FAILED]
Exit code : 256
/home/digvijay/aster/11.0.10/NEW11.0/bibfor/elements/te0215.f: In subroutine `te0215':
/home/digvijay/aster/11.0.10/NEW11.0/bibfor/elements/te0215.f:93: 
         COMPOR = ZK16(ICOMPO)
         ^
Expression at (^) has incorrect data type or rank for its context


<E>_COMPIL_ERROR   error during compiling /home/digvijay/aster/11.0.10/NEW11.0/bibfor/elements/te0215.f (see /home/digvijay/aster/11.0.10/NEW11.0/obj/asterd/elements.msg)

compiling ...jay/aster/11.0.10/NEW11.0/bibfor/elements/te0216.f         [FAILED]
Exit code : 256
/home/digvijay/aster/11.0.10/NEW11.0/bibfor/elements/te0216.f: In subroutine `te0216':
/home/digvijay/aster/11.0.10/NEW11.0/bibfor/elements/te0216.f:85: 
         COMPOR = ZK16(ICOMPO)
         ^
Expression at (^) has incorrect data type or rank for its context


<E>_COMPIL_ERROR   error during compiling /home/digvijay/aster/11.0.10/NEW11.0/bibfor/elements/te0216.f (see /home/digvijay/aster/11.0.10/NEW11.0/obj/asterd/elements.msg)

Now what should I do?

Offline

#9 2011-10-09 12:32:35

Thomas DE SOZA
Guru
From: EDF
Registered: 2007-11-23
Posts: 3,066

Re: [SOLVED] Fedora 15 : scotch compiling error

Hi,

3 things :

- regarding MUMPS not compiling even after installing Scotch from source and completing the setup.cfg : this is because you miss the zlib library. Install it (and possibly the dev package to provide all the symbolic links)

- regarding the problem of compiling MUMPS after having disabled Scotch. This is indeed a shortcoming in the setup, it does not remove the search for libesmumps after you have disable d Scotch. So you must also in this case install MUMPS from source (start from the temporary directory left in /tmp, its path is given in config.log, make the necessary changes in the Makefile.inc to remove Scotch linking and compile again).

- regarding the problem with the TE0215.f and TE0216.f. There's indeed a small typo in the aforementioned files. We'll fix it thanks for the feedback. The fact that it does compile in-house and not with your install may be due to your using a recent compiler. In the meantime make the following changes :

Replace

      COMPOR = ZK16(ICOMPO)

with

      COMPOR(1) = ZK16(ICOMPO)

TdS

Offline

#10 2011-10-09 18:50:33

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

Re: [SOLVED] Fedora 15 : scotch compiling error

Finally I managed to install aster successfully. Still eficas is unable to build and showing error. But I dont think I need eficas. So at least for now my problem seems to be resolved.
I also ran 30 tests of which 3 had ABNORMAL_ABORT, 6 had ALARMS and other went fine.

So here is what made it install successfully. I am reiterating the process below. Someone may find it useful.

1. Installed scotch from source available in aster-full-src archive. Earlier I had scotch shared libraries(.so) compiled successfully but for some reason mumps was not compiling. So this time I built scotch static libraries (.a). (I used Makefile.gfortran.SEQ for this purpose)

2. Since as pointed by THOMAS in above post, there are problems with te0215.f and te0216.f files, I extracted the aster-src package (available in aster-full-src-<version>/SRC directory), changed the above 2 files as instructed and then again archived it and gave exactly the same name as it had earlier.

3. in the setup.cfg uncommented the line HOME_SCOTCH = '' and gave the proper path of scotch directory(where scotch is compiled).

4. python setup.py install

Thats all!

Thank you all for helping me to install the new version of aster.

Offline

#11 2011-10-12 10:10:57

dbpatankar
Member
From: Roorkee, Uttarakhand, India
Registered: 2010-05-22
Posts: 172

Re: [SOLVED] Fedora 15 : scotch compiling error

Hi all,

Just one update. Last time installation showed error with eficas and the error was :(last line)

# Environment settings :


--------------------------------------------------------------------------------
Checking for dependencies and required variables for 'eficas'...       [  OK  ]

--------------------------------------------------------------------------------
Installation of   : eficas 6.3.0
  Eficas is an graphical editor for Code_Aster command files.
Archive filename  : eficas-6.3.0
Destination       : /home/digvijay/aster/11.0.10/public/eficas-6.3.0
Working directory : /home/digvijay/aster/11.0.10/public
--------------------------------------------------------------------------------

Filling cache...                                                       [  OK  ]
Checking permissions...                                                [  OK  ]

>>> Extraction <<<

entering directory '/home/digvijay/aster/11.0.10/public'
Extracting eficas-6.3.0-1.tar.gz...                                    [  OK  ]
 --- 1194 files extracted
leaving directory '/home/digvijay/aster/11.0.10/public'

>>> Installation <<<

 *** Exception raised : directory not exists /home/digvijay/aster/11.0.10/bin

So this time I myself created the bin directory and now the compilation is fine. Everything including eficas compiled and I am happy now smile

So there may be some small bug/error in code because of which it is unable to create the bin directory.

Offline

#12 2011-10-24 13:52:27

AsterO'dactyle
Administrator
Registered: 2007-11-29
Posts: 255

Re: [SOLVED] Fedora 15 : scotch compiling error

Corrected in 11.0.28 (bugtracker 17693)


Code_Asterの開発者

Offline

#13 2011-12-07 01:26:10

cacciatorino
Member
From: Porto Recanati, Italy
Registered: 2008-11-05
Posts: 729

Re: [SOLVED] Fedora 15 : scotch compiling error

AsterO'dactyle wrote:

Corrected in 11.0.28 (bugtracker 17693)

Do you refer to this error while compiling scotch from source?

/usr/bin/ld: ../../lib/libscotch.a(common_file_compress.o): undefined reference to symbol 'pthread_create@@GLIBC_2.2.5'
/usr/bin/ld: note: 'pthread_create@@GLIBC_2.2.5' is defined in DSO /lib64/libpthread.so.0 so try adding it to the linker command line
/lib64/libpthread.so.0: could not read symbols: Invalid operation
collect2: ld returned 1 exit status

I find this error while trying to install CA on a Fedora 16 x64 (python 2.7.2, gcc 4.6.2).

Offline

#14 2011-12-07 08:34:26

mathieu.courtois
Administrator
From: France
Registered: 2007-11-21
Posts: 1,163

Re: [SOLVED] Fedora 15 : scotch compiling error

Hello,

Adjustments must be done the Makefile of scotch. The next package aster-full will do it.
By hand you must add the pthread library at the link stage and it should also need the --no-as-needed option.

MC


Code_Aster release : last unstable on Ubuntu 16.04 64 bits - GNU Compilers

Please do not forget to tag your first post as *SOLVED* when it is!

Offline

#15 2011-12-07 15:25:40

cacciatorino
Member
From: Porto Recanati, Italy
Registered: 2008-11-05
Posts: 729

Re: [SOLVED] Fedora 15 : scotch compiling error

courtois wrote:

Hello,

Adjustments must be done the Makefile of scotch. The next package aster-full will do it.
By hand you must add the pthread library at the link stage and it should also need the --no-as-needed option.

MC

I guess I will wait till next release, this my last attempt was the top-end of my knowledge! lol

Thank you for your attention.

Last edited by cacciatorino (2011-12-07 15:26:00)

Offline